Repopulating Bowel Bacteria

Repopulating Bowel Bacteria

Majid Ali, MD

A “seed, feed and occasionally weed” holistic approach to the problem of restoring a damaged bowel ecosystem is the centerpiece of my chronic fatigue management.

Seeding is the repopulation of the gut with microflora that have been destroyed by indiscriminate use of antibiotics or crowded out by the unrestrained proliferation of yeast and bacterial organisms such as the Proteus and Pseudomonas species. The “guardian angel bacteria” for bowel ecology belong to the Bifidobacterium and Lactobacillus species. Some other species also play protective roles. In health, these organisms provide the necessary counterbalance to the growth of yeast and pathogenic bacterial organisms. Beyond this, these organisms produce several molecules that play critical roles in our molecular defense systems.

Feeding is the use of some growth factors that the normal bowel flora require to flourish. These include biotin, pantetheine, Vitamin B12 and others. We clinicians have used Vitamin B12 for decades with good clinical results (to the great chagrin of those “academicians” who considered it quackery because they couldn’t understand how this vitamin could ever help anybody except those with pernicious anemia). One of the principal mechanisms by which vitamin B12 exerts its myriad beneficial effects is by serving as a “growth hormone” for health-preserving bowel flora. Of course, this vitamin has several other essential roles. It plays a role in the citric acid cycle (the main molecular pathway for energy generation where it facilitates the conversion of methylmalonyl-CoA to succinyl-CoA) and is essential for cell maturation. Further, Vitamin B12 benefits many patients with neuropsychiatric disorders unassociated with anemia or macrocytosis (N Eng J Med 318:1720; 1988).

Occasional weeding is the use of several natural substances that are known to suppress the overgrowth of pathogenic bacteria, viruses and yeasts. During initial treatment, I frequently use oral nystatin or fluoconazole (Diflucan) for short periods of two to three weeks, partly for diagnostic and partly for therapeutic reasons (how a person with one of the ABE states responds to these agents is useful in assessing the degree of damage to bowel ecology). Extensive clinical experience has convinced me that long-term clinical results are far superior when the use of drugs is kept to a minimum.


Simple-minded efforts to “get rid of the yeast” with nystatin and “yeast-free diets” usually yield poor long-term results. Cold hands are associated with “cold bowel.” Cold hands and cold bowel are the result of oxidatively-damaged thyroid enzymes (underactive thyroid gland), oxidatively-damaged autonomic nerve cells and fibers (dysautonomia) or an oxidatively- overdriven adrenalin gland (the relentless chatter of the cortical monkey). None of these problems can be effectively managed with yeast-free diets and Nystatin. Of course, there are other essential issues of nutrition, environment, food and mold allergy, and fitness. In the management of battered bowel ecosystems, it is essential to consider the biologic individuality of the patient. It is necessary to adopt an integrated, long-term approach that addresses all relevant issues of bowel flora and parasites, bowel transit time, bowel ischemic patterns, IgE- mediated disorders related to Candida and other yeast antigens, malabsorptive dysfunctions, and secondary systemic consequences.
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Bowel Disorders Bundle 1
Bowel Disorders Bundle 2


In this DVD video seminar, Prof. Ali describes his guidelines for gentle daily bowel detox and colon cleanse. He explains the advantages of this approach over intense one-week to 3-week programs which, notwithstanding their temporary benefits, often create adverse effects programs bowel.

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Majid Ali, MD is a humanist, physician, scientist, poet, story-teller, and the solo author of The Principles and Practice of Integrative Medicine (in 12 Volumes) and 36 other books. The following is an outline of his journey in search of what it means to be a human, and the meanings of suffering, ethics, truth, and enlightenment: * A surgeon-turned-pathologist * A pathologist-turned-immunologist * An immunologist-turned-ecologist * An ecologist-turned-nutritionist * A nutritionist-turned energy practitioner * An energy practitioner-turned-philosopher * A philosopher-turned-humanist * A story teller * A Poet Dr. Ali’s works span 50 years in medicine. The staff of have been given the charge of collecting his massive volume of works in one place with a clear and concise navigation structure to help you find the information you need. Majid Ali, MD, the collected works of 50 years in medicine offering alternative options for patients is now here for you 24 x 7 x 365 days a year. BUT we need help – the staff and up keep of our website runs about $5,000 a month and we are trying not to sell anything – we would rather post everything for free – if you can help out – see below – we will send you a lot of free gifts! The goal of this website is to provide thousands of free videos without ads or commercial interruption on various and diverse health topics discussed by Majid Ali MD in addition to the printed material of tens of thousands of pages of medical observation! We invite you to join our mission of spreading authentic health and healing knowledge that is free of corporate deceptions and ideological distortions. We are committed to ethics and authenticity in learning, compassion, enlightenment, and Healing.


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